Publications

Exploring the intersection of Deep Learning and Medical Imaging through rigorous study and experimentation.

20267

GCASR'26Poster
2026
Jie Ye, Shazzadul Islam, Jaime Cernuda, Xian-He Sun, Anthony Kougkas
Multi-Agent SystemsSpeculative ExecutionOrchestration+1
Poster

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@misc{ye2026accelerating,
  author = {Ye, Jie and Islam, Shazzadul and Cernuda, Jaime and Sun, Xian-He and Kougkas, Anthony},
  title = {Accelerating Multi-Agent Orchestration with Speculative Dispatching},
  howpublished = {Poster, 13th Greater Chicago Area Systems Research Workshop (GCASR 2026), Evanston, IL},
  year = {2026},
  month = {May},
}
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eScience'26Conference
2026
Rajni Pawar, Luke Logan, Jaime Cernuda, Xian-He Sun, Anthony Kougkas
Semantic SearchAI AgentsMCP+1

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@inproceedings{pawar2026acropolis,
  title={Acropolis: A Portable, AI-Driven Semantic Search System for HPC},
  author={Pawar, Rajni and Logan, Luke and Cernuda, Jaime and Sun, Xian-He and Kougkas, Anthony},
  booktitle={22nd IEEE International Conference on eScience (eScience 2026)},
  year={2026}
}
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eScience'26Conference
2026
Keith Bateman, Jaime Cernuda, Luke Logan, Bogdan Nicolae, Franck Cappello, Xian-He Sun, Anthony Kougkas
Agentic WorkflowsFault InjectionBenchmarking+1

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@inproceedings{bateman2026aes,
  title={Agent Error Simulator: Fault Injection for Testing Recovery in Agentic Workflows},
  author={Bateman, Keith and Cernuda, Jaime and Logan, Luke and Nicolae, Bogdan and Cappello, Franck and Sun, Xian-He and Kougkas, Anthony},
  booktitle={22nd IEEE International Conference on eScience (eScience 2026)},
  year={2026}
}
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GCASR'26Poster
2026
Shazzadul Islam, Jaime Cernuda, Xian-He Sun, Anthony Kougkas
AI AgentsScientific Data DiscoverySearch Efficiency+1
Poster

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@misc{islam2026agenticsearch,
  title={Agentic Search Efficiency for Scientific Data Discovery},
  author={Islam, Shazzadul and Cernuda, Jaime and Sun, Xian-He and Kougkas, Anthony},
  booktitle={13th Greater Chicago Area Systems Research Workshop (GCASR 2026)},
  year={2026},
  month=may,
  address={Evanston, IL, USA},
  note={Poster presentation}
}
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GCASR'26Poster
2026
Izzet Yildirim, Jie Ye, Jaime Cernuda, Xian-He Sun, Anthony Kougkas
LLM AgentsI/O CharacterizationScientific Data+1
Poster

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@inproceedings{yildirim2026correctisnotioefficient,
  title={Correct Is Not I/O Efficient: Characterizing I/O Behavior of LLM Agents on Scientific Data},
  author={Yildirim, Izzet and Ye, Jie and Cernuda, Jaime and Sun, Xian-He and Kougkas, Anthony},
  booktitle={13th Greater Chicago Area Systems Research Workshop (GCASR 2026)},
  year={2026},
  month={may},
  note={Poster presentation}
}
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GCASR'26Poster
2026
Zia Uddin Chowdhury, Jaime Cernuda, Jie Ye, Anthony Kougkas, Xian-He Sun
KV CacheLLM InferenceTransformers
Poster

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@misc{chowdhury25prevspost,
  title={Pre-RoPE versus Post-RoPE Trading Per-Step Compute for KVCache Survivability},
  author={Chowdhury, Zia Uddin and Cernuda, Jaime and Ye, Jie and Kougkas, Anthony and Sun, Xian-He},
  booktitle={Greater Chicago Area Systems Research (GCASR)},
  year={2026},
  month=may,
  address={Chicago, USA},
  note={Poster presentation}
}
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eScience'26Conference
2026
Hua Xu, Jaime Cernuda, Anthony Kougkas, Xian-He Sun, Ana Gainaru, Scott Klasky, M. Taufer, N. Tan, K. Assogba, M. Rafique, Bogdan Nicolae, J. Teves, C. Brinker, L. Pouchard, Jay Lofstead
In Situ ProcessingDerived QuantitiesI/O Libraries+1

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@inproceedings{xu2026richoperators,
  title={Rich I/O-centric Derived Quantity Operators for Advanced In Situ Processing},
  author={Xu, Hua and Cernuda, Jaime and Kougkas, Anthony and Sun, Xian-He and Gainaru, Ana and Klasky, Scott and Taufer, M. and Tan, N. and Assogba, K. and Rafique, M. and Nicolae, Bogdan and Teves, J. and Brinker, C. and Pouchard, L. and Lofstead, Jay},
  booktitle={22nd IEEE International Conference on eScience (eScience 2026)},
  year={2026}
}
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20254

IPDPS'25Conference
2025
Jie Ye, Jaime Cernuda, Avinash Maurya, Xian-He Sun, Anthony Kougkas, Bogdan Nicolae
TransformersKV CachingInference Optimization
PDF

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@inproceedings{ye2025characterizing,
  title={Characterizing the Behavior and Impact of KV Caching on Transformer Inferences under Concurrency},
  author={Ye, Jie and Cernuda, Jaime and Maurya, Avinash and Sun, Xian-He and Kougas, Anthony and Nicolae, Bogdan},
  booktitle={IPDPS'25: The 39th IEEE International Parallel and Distributed Processing Symposium},
  year={2025}
}
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SSDBM'25Conference
2025
Keith Bateman, Neeraj Rajesh, Jaime Cernuda, Luke Logan, Bogdan Nicolae, Franck Cappello, Xian-He Sun, Anthony Kougkas
AI WorkflowsData StacksTask Systems
PDFCode

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@inproceedings{10.1145/3733723.3733736,
  author = {Bateman, Keith Alex and Rajesh, Neeraj and Cernuda, Jaime and Logan, Luke and Nicolae, Bogdan and Cappello, Franck and Sun, Xian-He and Kougkas, Anthony},
  title = {DTIO: Data Stack for AI-driven Workflows},
  year = {2025},
  booktitle = {Proceedings of the 37th International Conference on Scalable Scientific Data Management},
  doi = {10.1145/3733723.3733736}
}
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SSDBM'25Poster
2025
H. Xu, Anthony Kougkas, Xian-He Sun, Jaime Cernuda
HPCMetadata ManagementStorage
Poster

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@inproceedings{xu2025operators,
  title={Rich Operators for Advanced In Situ Processing},
  author={Xu, H. and Kougkas, Anthony and Sun, Xian-He and Cernuda, Jaime},
  booktitle={The 37th International Conference on Scalable Scientific Data Management (SSDBM 2025)},
  year={2025}
}
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eScience'25Poster
2025
S. Islam, Jaime Cernuda, I. Muradli, Anthony Kougkas, Xian-He Sun
AILLMMCP+1
PDF

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@inproceedings{islam2025aidriven,
  title={Towards an AI-driven scientific workflow},
  author={Islam, S. and Cernuda, Jaime and Muradli, I. and Kougkas, Anthony and Sun, Xian-He},
  booktitle={21st IEEE International Conference on eScience (eScience '25)},
  year={2025}
}
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20245

CLUSTER'24Conference
2024
Meng Tang, Jaime Cernuda, Jie Ye, Luanzheng Guo, Nathan R. Tallent, Anthony Kougkas, Xian-He Sun
Workflow OptimizationDataflow AnalysisScientific Workflows
PDFCode

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@inproceedings{tang2024dayu,
  author = {Tang, Meng and Cernuda, Jaime and Ye, Jie and Guo, Luanzheng and Tallent, Nathan R. and Kougkas, Anthony and Sun, Xian-He},
  title = {DaYu: Optimizing Distributed Scientific Workflows by Decoding Dataflow Semantics and Dynamics},
  year = {2024},
  booktitle = {Proceedings of the 2024 IEEE International Conference on Cluster Computing (CLUSTER)},
  pages = {357--369},
  doi = {10.1109/CLUSTER59578.2024.00038}
}
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CCGRID'24Conference
2024
Jaime Cernuda, Luke Logan, Ana Gainaru, Scott Klasky, Jay Lofstead, Anthony Kougkas, Xian-He Sun
Active StorageData AnalysisHPC
PDFCode

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@inproceedings{cernuda2024hades,
  title={Hades: A Context-Aware Active Storage Framework for Accelerating Large-Scale Data Analysis},
  author={Cernuda, Jaime and Logan, Luke and Gainaru, Ana and Klasky, Scott and Lofstead, Jay and Kougkas, Anthony and Sun, Xian-He},
  booktitle={The 24th IEEE/ACM International Symposium on Cluster, Cloud and Internet Computing},
  pages = {577--586},
  year={2024},
  doi={DOI 10.1109/CCGrid59990.2024.00070}
}
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ICPP'24Conference
2024
Jaime Cernuda, Jie Ye, Anthony Kougkas, Xian-He Sun
Data StreamingHPCHierarchical Storage
PDFCode

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@inproceedings{10.1145/3673038.3673150,
  author = {Cernuda, Jaime and Ye, Jie and Kougkas, Anthony and Sun, Xian-He},
  title = {HStream: A hierarchical data streaming engine for high-throughput scientific applications},
  year = {2024},
  booktitle = {Proceedings of the 53rd International Conference on Parallel Processing},
  pages = {231–240},
  doi = {10.1145/3673038.3673150}
}
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PDSW'24Workshop
2024
Jaime Cernuda, Luke Logan, Nicholas Lewis, Suren Byna, Xian-He Sun, Anthony Kougkas
DeploymentHPCHardware Abstraction+2
PDFCode

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@inproceedings{cernuda2024jarvis,
  title={Jarvis: Towards a Shared, User-Friendly, and Reproducible, I/O Infrastructure},
  author={Cernuda, Jaime and Logan, Luke and Lewis, Nicholas and Byna, Suren and Sun, Xian-He and Kougkas, Anthony},
  booktitle={The International Parallel Data Systems Workshop (PDSW'24)},
  year={2024}
}
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ICPP'24Conference
2024
Jie Ye, Jaime Cernuda, Neeraj Rajesh, Keith Bateman, Orcun Yildiz, Tom Peterka, Arnur Nigmetov, Dmitriy Morozov, Xian-He Sun, Anthony Kougkas
Deep LearningModel StorageI/O Framework
PDFCode

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@inproceedings{ye2024viper,
  title={Viper: A High-Performance I/O Framework for Transparently Updating, Storing, and Transferring Deep Neural Network Models},
  author={Ye, Jie and Cernuda, Jaime and Rajesh, Neeraj and Bateman, Keith and Yildiz, Orcun and Peterka, Tom and Nigmetov, Arnur and Morozov, Dmitriy and Sun, Xian-He and Kougkas, Anthony},
  booktitle={Proceedings of the 53rd International Conference on Parallel Processing},
  pages={812--821},
  year={2024}
}
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20222

SC'22Conference
2022
Luke Logan, Jaime Cernuda, Jay Lofstead, Xian-He Sun, Anthony Kougkas
I/O StacksUserspaceModular Systems
PDFCode

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@inproceedings{logan2022labstor,
  title={LabStor: A Modular and Extensible Platform for Developing High-Performance, Customized I/O Stacks in Userspace},
  author={Logan, Luke and Garcia, Jaime Cernuda and Lofstead, Jay and Sun, Xian-He and Kougkas, Anthony},
  booktitle={2022 SC22: International Conference for High Performance Computing, Networking, Storage and Analysis (SC)},
  pages={309--323},
  year={2022},
  organization={IEEE Computer Society}
}
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HiPC'22Conference
2022
Keith Bateman, Neeraj Rajesh, Jaime Cernuda, Luke Logan, Jie Ye, Stephen Herbein, Anthony Kougkas, Xian-He Sun
Resource ProvisioningAuto-ConfigurationStorage Services
PDFCode

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@INPROCEEDINGS{bateman2022luxio,
  author={Bateman, Keith and Rajesh, Neeraj and Cernuda Garcia, Jaime and Logan, Luke and Ye, Jie and Herbein, Stephen and Kougkas, Anthony and Sun, Xian-He},
  booktitle={2022 IEEE 29th International Conference on High Performance Computing, Data, and Analytics (HiPC)}, 
  title={LuxIO: Intelligent Resource Provisioning and Auto-Configuration for Storage Services}, 
  year={2022},
  pages={246-255},
  doi={10.1109/HiPC56025.2022.00041}
}
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20212

HPDC'21Conference
2021
Neeraj Rajesh, Hariharan Devarajan, Jaime Cernuda, Keith Bateman, Luke Logan, Jie Ye, Anthony Kougkas, Xian-He Sun
Machine LearningStorage MonitoringReal-time Systems
PDFCode

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@inproceedings{10.1145/3431379.3460640,
  author = {Rajesh, Neeraj and Devarajan, Hariharan and Garcia, Jaime Cernuda and Bateman, Keith and Logan, Luke and Ye, Jie and Kougkas, Anthony and Sun, Xian-He},
  title = {Apollo: An ML-Assisted Real-Time Storage Resource Observer},
  year = {2020},
  booktitle = {Proceedings of the 30th International Symposium on High-Performance Parallel and Distributed Computing},
  pages = {147–159},
  doi = {10.1145/3431379.3460640}
}
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CLUSTER'21Conference
2021
Jaime Cernuda, Hariharan Devarajan, Luke Logan, Keith Bateman, Neeraj Rajesh, Jie Ye, Anthony Kougkas, Xian-He Sun
Data ForwardingHPCElastic Systems
PDFCode

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@inproceedings{cernuda2021HFlow,
  title={HFlow: A Dynamic and Elastic Multi-Layered Data Forwarder},
  author={Cernuda, Jaime and Devarajan, Hariharan and Logan, Luke and Bateman, Keith and Rajesh, Neeraj and Ye, Jie and Kougkas, Anthony and Sun, Xian-He},
  booktitle={Proceedings of the IEEE Cluster Conference 2021},
  pages={114--124},
  year={2021}
}
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20201

MSST'20Conference
2020
Anthony Kougkas, Hariharan Devarajan, Keith Bateman, Jaime Cernuda, Neeraj Rajesh, Xian-He Sun
Distributed SystemsLog StorageTime-based Ordering
PDFCode

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@inproceedings{kougkas2020chronolog,
  title={ChronoLog: A Distributed Shared Tiered Log Store with Time-based Data Ordering},
  author={Kougkas, Anthony and Devarajan, Hariharan and Bateman, Keith and Cernuda, Jaime and Rajesh, Neeraj and Sun, Xian-He},
  booktitle={Proceedings of the 36th International Conference on Massive Storage Systems and Technology (MSST 2020)}
}
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20191

SC'19Poster
2019
Jaime Cernuda, H. Trivino, Hariharan Devarajan, Anthony Kougkas, Xian-He Sun
Data EvictionTiered StorageHPC
PDF

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@inproceedings{cernuda2019eviction,
  title={Efficient Data Eviction across Multiple Tiers of Storage},
  author={Cernuda, Jaime and Trivino, H. and Devarajan, Hariharan and Kougkas, Anthony and Sun, Xian-He},
  booktitle={The International Conference for High Performance Computing, Networking, Storage and Analysis (SC'19)},
  year={2019}
}
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